Вход на сайт

Просмотр новости

Найдите то, что Вас интересует

Surveillance-Driven Machine Learning for Prediction of Antimicrobial Susceptibility: An Explainable Modeling Framework using the Pfizer ATLAS Dataset (2004 - 2023) [version 2; peer review: 2 approved, 1 not approved]

Дата публикации: 21-09-2026 15:13:02

Background Antimicrobial resistance (AMR) is a growing global public health threat, particularly in low- and middle-income countries (LMICs), where delayed antimicrobial susceptibility testing (AST) and limited diagnostic capacity complicate timely treatment and antimicrobial stewardship (AMS). Although large-scale surveillance programmes routinely collect antimicrobial susceptibility data, these datasets remain underutilised for predictive analytics. Methods We developed a surveillance-driven machine learning (ML) framework using isolate-level data from African sites participating in the Pfizer Antimicrobial Testing Leadership and Surveillance (ATLAS) programme between 2019 and 2023. Seven antibiotic-specific Extreme Gradient Boosting (XGBoost) models were developed to predict antimicrobial susceptibility using routinely collected microbiological, demographic, clinical, and geographical metadata. Model development included structured data preprocessing, RandomOverSampler-based class balancing restricted to the training data, hyperparameter optimisation using stratified cross-validation, and evaluation on a held-out test dataset. A rule-based MIC interpretation system and interactive dashboard were developed to demonstrate implementation of the analytical workflow. Results The antibiotic-specific models demonstrated moderate predictive performance, with test accuracies ranging from 57% to 76%. Ceftazidime-Avibactam achieved the highest test accuracy (76%), followed by Gentamicin (65%) and Imipenem (64%), while Amikacin showed the lowest performance (57%). Feature-importance analysis identified bacterial species as consistently among the most influential predictors. In contrast, bacterial family, country of isolate collection, specimen source, clinical specialty, and demographic characteristics contributed to varying degrees across antibiotics. Performance was generally stronger for the more frequently represented susceptible class than for intermediate and resistant isolates. Conclusion Routinely collected AMR surveillance data can support antibiotic-specific ML predictions without requiring genomic sequencing or detailed patient-level clinical information. This study provides a proof-of-concept framework for surveillance-driven predictive analytics that could complement conventional AMR surveillance and AMS. External validation, calibration, prospective clinical evaluation, and implementation studies are required before routine deployment.

Схожие новости

#Наименование новостиТональностьИнформативностьДата публикации
1Strengthening systems to monitor antibiotics. An action oriented approach [version 2; peer review: 1 approved, 2 approved with reservations]08.2524-09-2026
2The “readily available” second-line antibiotics are more cost-effective than the “easily accessible” first-line antibiotics as the initial management of Urinary Tract Infections and Chorioamnionitis in Malawi [version 2; peer review: 2 approved with reservations]09.6417-09-2026
3В России создали устройство для оценки устойчивости бактерий к антибиотикам015.5730-09-2026
4GSK tops Antimicrobial Resistance (AMR) Benchmark Report06.2710-03-2026
5Bloodstream-associated Salmonella Typhimurium and Enteritidis iNTS pathovariants hyper-replicate in human macrophages [version 1; peer review: awaiting peer review]08.915-09-2026
6Theory–simulation–application framework to enhance biostatistical capacity for HIV and cancer data analysis in sub-Saharan Africa: lessons learnt from Tanzania [version 1; peer review: awaiting peer review]08.5110-09-2026
7Evaluating the 7-1-7 Outbreak Response Metric: Modelling and Implementation Insights for Ebola, Measles, and Anthrax in Central and Eastern Uganda, 2025 [version 2; peer review: 2 approved with reservations]011.412-09-2026
8Combining Implementation and Data Sciences to Accelerate Evidence Integration into Healthcare – ImpleMATE [version 3; peer review: 1 approved, 2 approved with reservations]010.6110-09-2026
9Process mapping of a collaborative quality improvement study to optimise the use of antibiotics in intensive care units in Argentina: a Pathfinder study [version 2; peer review: 1 approved]06.8322-09-2026
10Improving Medication Safety in Chronic Kidney Disease Using Rule-Based and Artificial Intelligence–Based Clinical Decision Support Systems: A Systematic Review of Randomized Controlled Trials [version 2; peer review: 2 approved]011.1728-08-2026

Классификация: Наука. Схожих патентов: 0. Схожих новостей: 10. Тональность: 0. Информативность: 13.88. Источник: wellcomeopenresearch.org.